Function reference • bayescores

All functions

AURA3_1A AURA3_1A: Data from the AURA3_1A Trial

aura3_toxicity: Toxicity and quality of life data from the AURA3 trial

bayescores(): Bayescores: Full Bayesian Pipeline (Interactive Shiny App)

BOLERO3_2: Data from the BOLERO3_2 Trial

bolero3_toxicity: Toxicity and quality of life data from the BOLERO3 trial

calculate_asco_nhb(): Calculate the ASCO Net Health Benefit (NHB) Score

calculate_esmo_mcbs(): Calculate the ESMO-MCBS v2.0 Score (Guided by Objective)

calculate_toxicity_analysis(): Calculate a complete toxicity analysis

checkmate649_toxicity: Toxicity and quality of life data from the CheckMate-649 trial

cm649: Data from the CheckMate-649 Trial

cm649_2024_update: Data from the CheckMate-649 Trial -2024 update

CONCUR_2A: Data from the CONCUR_2A Trial

concur_toxicity: Toxicity and quality of life data from the CONCUR trial

COUAA202_2: Data from the COUAA202_2 Trial

create_amit_plot(): Create an AMIT plot (Adverse Event Dot Plot) from a clinical trial object.

DART0105_2A: Data from the DART0105_2A Trial

dart0105_toxicity: Toxicity and quality of life data from the DART0105 trial

diagnose_fit(): Diagnose Bayesian MCMC fit

esopec: Data from the esopec Trial

esopec_toxicity: Toxicity and QoL data from esopec_toxicity

extract_mcmc_cure_diffs(): Extract MCMC Samples for the Difference in Cure Rates

extract_mcmc_time_ratios(): Extract MCMC Samples for the Time Ratio

fit_bayesian_cure_model(): Fit the Bayesian Cure Model (Engine)

GEICAM2003_2A: Data from the GEICAM2003_2A Trial

geicam2003_toxicity: Toxicity and quality of life data from the GEICAM 2003 trial

generate_qol_vector(): Interactively Generate a Quality of Life (QoL) Probability Vector

generate_sensitivity_dashboard(): Generate Comprehensive Sensitivity Analysis Dashboard

GETUG12_2: Data from the GETUG12_2 Trial

getug12_toxicity: Toxicity and quality of life data from the GETUG12 trial

get_bayescores(): Calculate BayeScores Final Utility Score (Version 4, Corrected Toxicity Model)

get_bayescores_draws(): Get Original or Shrunk MCMC Draws for Subsequent Analyses (Updated)

glow: Data from the glow Trial

glow_toxicity: Toxicity and quality of life data from the GLOW trial

imbrave150_toxicity: Toxicity and quality of life data from the IMBRAVE150 trial

IMELDA_2A: Data from the IMELDA_2A Trial

imelda_toxicity: Toxicity and quality of life data from the IMELDA trial

KEYNOTE024_1A: Data from the KEYNOTE024_1A Trial

keynote024_toxicity: Toxicity and quality of life data from the KEYNOTE024 trial

KEYNOTE062: Data from the KEYNOTE062 Trial

Keynote062_toxicity: Toxicity and QoL data from Keynote062_toxicity

keynote_119_toxicity: Toxicity and QoL data from KEYNOTE-119

kn119: Digitized survival data from KEYNOTE-119

luxlung3_6_toxicity: Toxicity and quality of life data from the LUX‑Lung 3 and 6 trials

LUXLung8_2A: Data from the LUXLung8_2A Trial

luxlung8_toxicity: Toxicity and quality of life data from the LUX‑Lung 8 trial

MA17R_1A: Data from the MA17R_1A Trial

ma17r_toxicity: Toxicity and quality of life data from the MA17R trial

model_diagnostics() model_diagnostics(): Model Diagnostics

MONALEESA2_1: Data from the MONALEESA2_1 Trial

monaleesa2_toxicity: Toxicity and quality of life data from the MONALEESA‑2 trial

monarchE: Data from the monarchE Trial

monarchE_toxicity: Toxicity and QoL data from monarchE_toxicity

natalee: Data from the natalee Trial

natalee_toxicity: Toxicity and QoL data from natalee_toxicity

NO16968_2A: Data from the NO16968_2A Trial

NO16968_2C: Data from the NO16968_2C Trial

no16968_toxicity: Toxicity and quality of life data from the NO16968 trial

NOAH_2A: Data from the NOAH_2A Trial

NOAH_2B: Data from the NOAH_2B Trial

noah_toxicity: Toxicity and quality of life data from the NOAH trial

NSABPB35_2: Data from the NSABPB35_2 Trial

NSABPB35_3: Data from the NSABPB35_3 Trial

nsabpb35_toxicity: Toxicity and quality of life data from the NSABP B‑35 trial

NSABPB40_3A: Data from the NSABPB40_3A Trial

NSABPB40_3B: Data from the NSABPB40_3B Trial

nsabpb40_toxicity: Toxicity and quality of life data from the NSABP B‑40 trial

outcomes(): Generate a Summary Table of Model Outcomes (Final Version 2.1)

PALOMA2_1A: Data from the PALOMA2_1A Trial

paloma2_toxicity: Toxicity and quality of life data from the PALOMA2 trial

plot_correlated_densities(): Plot Correlated Posterior Densities

plot_densities(): Plot Posterior Densities

plot_final_utility_density() plot_final_utility_density(): Plot Utility Score Density Distribution

plot_km_curves(): Plot Kaplan-Meier Survival Curves

plot_qol_histogram(): Plot an Elegant Histogram of QoL Outcomes

plot_toxicity_density(): Plot Toxicity Score Density

plot_utility_donut(): Plot Utility Score Gauge Visualization

print(<bayes_summary>) print(<bayes_summary>): Print method for bayes_summary objects

PROFILE1014_1A: Data from the PROFILE1014_1A Trial

profile1014_toxicity: Toxicity and quality of life data from the PROFILE1014 trial

reconstruct_ipd(): Reconstruct Individual Patient Data from Multiple Kaplan-Meier Curves

RECOURSE_1A: Data from the RECOURSE_1A Trial

recourse_toxicity: Toxicity and quality of life data from the RECOURSE trial

run_plot_scenario(): Run a Scenario for a Sensitivity Plot

sample_qol_scores(): Sample Quality of Life (QoL) Scores from a Multinomial Distribution

simulate_trial_data(): Interactively or non-interactively simulate a realistic clinical trial dataset

simulate_weibull_cure_data(): Simulate Survival Data from a Cure Model

spotlight: Data from the spotlight Trial

spotlight_toxicity: Toxicity and quality of life data from the SPOTLIGHT trial

summarize_cure_rates(): Summarize Cure Rate Results

summarize_final_utility(): Summarizes the final utility score with advanced dynamic weighting.

time_ratio(): Calculate the Time Ratio

toga toga: Data from the toga Trial

toga_toxicity: Toxicity and quality of life data from the TOGA trial